RSS 1.0Welcome to The Natural History Museum repository
The Natural History Museum is an international leader in the study of the natural world. Our science describes the diversity of nature, promotes an understanding of its past, and supports the anticipation and management of the impact of human activity on the environment.
The Museum's repository provides free access to publications produced by more than 300 scientists working here. Researchers at the Museum study a diverse range of issues, including threats to Earth's biodiversity, the maintenance of delicate ecosystems, environmental pollution and disease. The accessible repository showcases this broad research output.
The repository was launched in 2016 with an initially modest number of journal publications in its database. It now includes book chapters and blogs from Museum scientists.
Communities in DSpace
Select a community to browse its collections.
Recently Added
-
The northernmost known observation of Myrmecophilus acervorum and the first records of Myrmecophilidae (Orthoptera, Ensifera) from LatviaThe first observations of myrmecophilous ant cricket Myrmecophilus acervorum (Panzer, 1799) and the family Myrmecophilidae from Latvia are presented. The observations were made in two locations subject to flooding in springtime. Adult and juvenile female individuals were observed. The discussed records appear to be the northernmost known distribution limit of this species.
-
The evolutionary history and timeline of mites in ancient soilsAcariform mites play a crucial role as primary soil decomposers, impacting the carbon cycle. However, the timing of their diversification is uncertain, with estimated dates ranging from the Precambrian (no land plants) to the Carboniferous (diverse terrestrial ecosystems). One factor affecting these time estimates is an uncertain phylogenetic position of the earliest unequivocal fossil mites from the Devonian Rhynie Chert, which have been classified in five modern families and three suborders. Here, we thoroughly examine these specimens, assign them to a single species Protacarus crani (family Protoacaridae, fam. nov., suborder Endeostigmata) and integrate this information into a time-calibrated phylogenetic analysis. Our phylogeny suggests a Cambrian basal divergence of Acariformes (508-486 Ma), coinciding with the land colonization by bryophytes. At this time, the mites' ecological niches were probably diversified beyond the upper soil. Our study provides temporal context, improves the accuracy of fossil dating, and underscores the importance of mites' diverse habitats and their potential roles in soil food webs.
-
Gregarious behaviour in Carboniferous cyclidan crustaceansGregarious behaviours in modern and fossil arthropods are commonly associated with defensive strategies, mass moulting and synchronous reproduction. Such behaviour is scarcely documented in the crustacean fossil record. Identifying clusters in extinct Pancrustacea is, therefore, important for understanding the evolutionary history and origin of crustacean gregariousness. Cyclida, an order of extinct, enigmatic pancrustaceans that have been subject to limited palaeoecological examination, represents an ideal group for testing the presence of gregarious behaviour. Here, we report a cluster of 50 <jats:italic>Schramine montanaensis</jats:italic> individuals from the Serpukhovian-aged Bear Gulch Limestone of Montana, USA, expanding the exceptionally rare record of cyclidan aggregations. The presence of articulated specimens with appendages and possible gill preservation supports the interpretation of carcasses that were preserved during a rapid burial event. We propose that this cluster records either a mass moulting event or clustering for shelter, representing one of the oldest records of crustacean gregariousness. These findings provide important insights into cyclidan life modes and ecological interactions in Carboniferous marine environments.
-
Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)The ability to identify and quantify the constituent plant species that make up a mixed‐species sample of pollen has important applications in ecology, conservation, and agriculture. Recently, metabarcoding protocols have been developed for pollen that can identify constituent plant species, but there are strong reasons to doubt that metabarcoding can accurately quantify their relative abundances. A PCR‐free, shotgun metagenomics approach has greater potential for accurately quantifying species relative abundances, but applying metagenomics to eukaryotes is challenging due to low numbers of reference genomes. We have developed a pipeline, RevMet (Reverse Metagenomics) that allows reliable and semi‐quantitative characterization of the species composition of mixed‐species eukaryote samples, such as bee‐collected pollen, without requiring reference genomes. Instead, reference species are represented only by ‘genome skims’: low‐cost, low‐coverage, short‐read sequence datasets. The skims are mapped to individual long reads sequenced from mixed‐species samples using the MinION, a portable nanopore sequencing device, and each long read is uniquely assigned to a plant species. We genome‐skimmed 49 wild UK plant species, validated our pipeline with mock DNA mixtures of known composition, and then applied RevMet to pollen loads collected from wild bees. We demonstrate that RevMet can identify plant species present in mixed‐species samples at proportions of DNA ≥ 1%, with few false positives and false negatives, and reliably differentiate species represented by high versus low amounts of DNA in a sample. RevMet could readily be adapted to generate semi‐quantitative datasets for a wide range of mixed eukaryote samples. Our per‐sample costs were £90 per genome skim and £60 per pollen sample, and new versions of sequencers available now will further reduce these costs.
-
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samplesAdaptive sampling is a method of software-controlled enrichment unique to nanopore sequencing platforms. To test its potential for enrichment of rarer species within metagenomic samples, we create a synthetic mock community and construct sequencing libraries with a range of mean read lengths. Enrichment is up to 13.87-fold for the least abundant species in the longest read length library; factoring in reduced yields from rejecting molecules the calculated efficiency raises this to 4.93-fold. Finally, we introduce a mathematical model of enrichment based on molecule length and relative abundance, whose predictions correlate strongly with mock and complex real-world microbial communities.
