Now showing items 1-20 of 1301

    • Pollinator-flower interactions in gardens during the COVID-19 pandemic lockdown of 2020

      Ollerton, Jeff; Trunschke, Judith; Havens, Kayri; Landaverde-González, Patricia; Keller, Alexander; Gilpin, Amy-Marie; Rodrigo Rech, André; Baronio, Gudryan J; Phillips, Benjamin J; Mackin, Chris; et al. (International Commission for Plant Pollinator Relations, 2022-07-27)
      During the main COVID-19 global pandemic lockdown period of 2020 an impromptu set of pollination ecologists came together via social media and personal contacts to carry out standardised surveys of the flower visits and plants in gardens. The surveys involved 67 rural, suburban and urban gardens, of various sizes, ranging from 61.18° North in Norway to 37.96° South in Australia, resulting in a data set of 25,174 rows, with each row being a unique interaction record for that date/site/plant species, and comprising almost 47,000 visits to flowers, as well as records of flowers that were not visited by pollinators, for over 1,000 species and varieties belonging to more than 460 genera and 96 plant families. The more than 650 species of flower visitors belong to 12 orders of invertebrates and four of vertebrates. In this first publication from the project, we present a brief description of the data and make it freely available for any researchers to use in the future, the only restriction being that they cite this paper in the first instance. The data generated from these global surveys will provide scientific evidence to help us understand the role that private gardens (in urban, rural and suburban areas) can play in conserving insect pollinators and identify management actions to enhance their potential.
    • Subfossil cyclostome bryozoans from Daidokutsu submarine cave, Okinawa, Japan

      Taylor, Paul D; Di Martino, Emanuela; Rosso, Antonietta; Chiu, Ruby WT; Fujita, Kazuhiko; Kitamura, Akihisa; Yasuhara, Moriaki (Coquina Press, 2025-07)
      A sediment core (Core 19) taken in Daidokutsu cave on Ie Island, Okinawa, spans the last 7,000 years. The sampling of multiple taxa from this submarine cave has been aimed at understanding the Holocene history of biodiversity and ecological dynamics. The results have already been published for ostracods, molluscs, foraminifera and cheilostome bryozoans. The current study focuses on the cyclostome bryozoan fauna, establishing a taxonomic foundation that will contribute to an understanding of responses by the bryozoan community in this cave habitat to environmental and climate changes through the Holocene. Very little has been published on modern and Quaternary fossil cyclostomes from Japan, and nearly all publications predate the routine use of scanning electron microscopy in cyclostome taxonomy. Fifteen cyclostome species are described here from Daidokutsu. Eight of these are new species, the remaining seven were identified only to the genus level. The high proportion of new species may not only reflect the uniqueness of the Daidokutsu cyclostome fauna but also the scarcity of studies on Japanese cyclostomes and the inadequacy of descriptions and figures in older publications, which make it difficult or impossible to interpret the species they describe. Unlike cyclostome cave faunas from the Mediterranean, erect cyclostomes strongly outnumber species with encrusting colonies. In addition, the secondary homonymy of Parasmittina ligulata, used for both a new species from Daidokutsu Cave and a Western Atlantic species, is resolved by renaming the Japanese species Parasmittina vieirai nom. nov.
    • Disporella guada sp. nov., an erect-ramose rectangulate cyclostome (Bryozoa, Stenolaemata) from the Carribean Sea: convergent evolution in bryozoan colony morphology

      Taylor, Paul D; Harmelin, Jean-Georges; Waeschenbach, A; Bouchon, Claude (Consortium of European Natural History Museums, 2021-09-27)
      The taxonomy of cyclostome bryozoans is founded on characters of the skeleton, but molecular sequence data have increasingly shown that established higher taxa are not monophyletic. Here we describe the skeletal morphology of a new species from Guadeloupe (French West Indies) with erect ramose colonies consisting of long, curved zooids that are typical of the suborder Cerioporina among living cyclostomes. However, molecular evidence from nuclear ribosomal RNA genes 18S and 28S places the new taxon in the suborder Rectangulata, where this colony-form has not been previously recorded. It nests firmly within the genus Disporella Gray, 1848, in a strongly supported clade that also includes Plagioecia patina (Lamarck, 1816) (Tubuliporina) and the sister taxa Doliocoitis cyanea Gordon & Taylor, 2001 (Rectangulata) and Favosipora rosea Gordon & Taylor, 2001 (Cerioporina). The short and robust branches of the new Guadeloupe cyclostome, here named Disporella guada Harmelin, Taylor & Waeschenbach sp. nov., are well adapted to life in shallow rocky sites exposed to severe wave action, which appear to be its exclusive habitat.
    • Fenestella and other bryozoans in the Carboniferous rocks of the British Isles

      Taylor, Paul D (Deposits Magazine, 2022-09-12)
      Ask a geologist to name a fossil bryozoan found in the rocks of the British Isles and the most likely answer will be Fenestella. The net-like fossils of Fenestella are especially abundant in the Carboniferous Limestone (Figs 1 and 2), although the genus, as used in its broadest sense, is also present in the Silurian, Devonian and Permian deposits of Britain.
    • The operculate cyclostome bryozoans: a chronicle of convergence, controversy and classification

      Taylor, Paul; Wyse Jackson, Patrick N; Spencer Jones, Mary E (International Bryozoology Association, 2022)
    • New species and a key to members of the Geminata clade (Solanum L.; Solanaceae) in Colombia

      Tovar, Juan David; Knapp, S; Giacomin, Leandro Lacerda (Sociedade Botânica do Brasil, 2024-11-01)
      As part of ongoing studies of Solanum in South America, three new species of the Geminata clade are described for Colombia. Solanum caquetense J.D.Tovar sp. nov., from the Department of Caquetá, is a riverside shrub found in lowland rainforests, with willow-like leaves characteristic of rheophyte plants. Solanum pinguiculum J.D. Tovar sp. nov. is confined to the understory of cloud forests on the eastern Andean slopes in the Departments of Cauca, Huila, and Putumayo, and is a tiny subshrub with somewhat watery stems and minute flowers. Solanum sabu J.D. Tovar sp. nov. is a rare plant, represented by a single collection from the eastern Andean slopes of the Cordillera Central in the Department of Tolima; it is a shrub with loose dendritic trichomes on abaxial leaf surface, and is described here to encourage further investigation in the field and herbaria. Differences between these new taxa and morphologically similar species are discussed, and photos, preliminary conservation status, and distribution maps are provided for all newly described species. To facilitate the identification of these morphologically very similar plants, a dichotomous key for all members of the Geminata clade occurring in Colombia is provided together with a synopsis of their distribution by Department.
    • XX International Botanical Congress, Madrid 2024: Report of Congress action on nomenclature proposals

      Turland, Nicholas J; Álvarez, Inés; Knapp, S; Monro, Anna M; Wiersema, John H (Wiley, 2024-10-22)
    • An evaporite sequence from ancient brine recorded in Bennu samples

      McCoy, TJ; Russell, SS; Zega, TJ; Thomas-Keprta, KL; Singerling, SA; Brenker, FE; Timms, NE; Rickard, WDA; Barnes, JJ; Libourel, G; et al. (Springer Science and Business Media LLC, 2025-01-29)
      Abstract: Evaporation or freezing of water-rich fluids with dilute concentrations of dissolved salts can produce brines, as observed in closed basins on Earth<jats:sup>1</jats:sup> and detected by remote sensing on icy bodies in the outer Solar System<jats:sup>2,3</jats:sup>. The mineralogical evolution of these brines is well understood in regard to terrestrial environments<jats:sup>4</jats:sup>, but poorly constrained for extraterrestrial systems owing to a lack of direct sampling. Here we report the occurrence of salt minerals in samples of the asteroid (101955) Bennu returned by the OSIRIS-REx mission<jats:sup>5</jats:sup>. These include sodium-bearing phosphates and sodium-rich carbonates, sulfates, chlorides and fluorides formed during evaporation of a late-stage brine that existed early in the history of Bennu’s parent body. Discovery of diverse salts would not be possible without mission sample return and careful curation and storage, because these decompose with prolonged exposure to Earth’s atmosphere. Similar brines probably still occur in the interior of icy bodies Ceres and Enceladus, as indicated by spectra or measurement of sodium carbonate on the surface or in plumes<jats:sup>2,3</jats:sup>.
    • An overview of the petrography and petrology of particles from aggregate sample from asteroid Bennu

      Connolly, Harold C; Lauretta, Dante S; McCoy, Timothy J; Russell, Sara S; Haenecour, Pierre; Polit, Anjani; Barnes, Jessica J; Zega, Thomas J; Yurimoto, Hisayoshi; Kawasaki, Noriyuki; et al. (Wiley, 2025-05-09)
      Abstract: The OSIRIS‐REx mission returned a sample of regolith from the carbonaceous asteroid Bennu in September 2023. We present preliminary in situ investigations of the petrology and petrography of selected particles ranging in size from 0.5 to 3 mm. Using a combination of optical and electron beam techniques, we investigate whole specimens and polished sections belonging to morphologically and visually distinct categories of particles. We find that morphological differences in the particles are reflective of petrographic and petrologic differences, leading to the conclusion that we have at least two distinct major lithologies in the bulk sample. Our findings support predictions from remote sensing, suggesting that the morphological differences observed in the boulder population of Bennu correspond to petrologic differences. Our data provide insight into the geologic activity on Bennu's parent body and the petrographic framework needed to contextualize the detailed analyses of this pristine asteroidal material.
    • Origin of the Jadar Volcano-Sedimentary Li-B Deposit, Serbia

      Putzolu, F; Armstrong, RN; Boyce, AJ; Hepburn, LE; Bompard, N; Najorka, J; Lefebvre-Desanois, M; Milton, AJ; Salge, T; Erak, D; et al. (Society of Economic Geologists, Inc., 2025-03-12)
      Abstract: The Jadar deposit (Serbia) is a unique end member of the volcano-sedimentary Li deposit class, where the main ore mineral is jadarite (LiNaSiB3O7(OH)), to date only recorded at the Jadar locality. We provide the first account of the features of the Jadar deposit based on the study of drill hole material, complemented by petrographic analysis, whole-rock, and isotopic geochemistry. The Li-B mineralization is hosted by sediments interlayered with tuffs that were deposited in a fault-bounded lacustrine basin. Mineralization processes initially involved alteration of volcanic glass through near-neutral and heated meteoric fluids, which resulted in the formation of hectorite. Lithium clays were later overprinted by higher-pH brines, which underwent significant evaporation, combined with conditions of Na+ and SiO2(aq) saturation, resulting in formation of siliceous gels that were the precursors to jadarite formation and extensive zeolitization of the intrabasinal sediments. Formation of jadarite occurred in two stages: (1) early diagenesis accompanied by zeolitization and precipitation of primary dolomite, which resulted in the sediment-hosted Li mineralization, (2) late remobilization of Li(B-Na)–saturated fluids, leading to formation of epigenetic jadarite-albite infills of fractured rocks. Isotopic geochemistry combined with mineral chemistry proxies indicate that early mineralizing processes were largely dominated by diagenetic fluids that experienced a thermal influence from the coeval cooling of the Miocene S-type granite member of the nearby Cer Mountain Complex. Late thermal maturation of organic matter then resulted in acidic fluids that dissolved the early ore assemblage and led to formation of late diagenetic lithiophosphate and low-Na borates.
    • Coastal seawater turbidity and thermal stress control growth of reef-building Porites spp. corals in Fiji

      Samperiz, Ana; Sosdian, Sindia; Hendy, Erica; Johnson, Kenneth; John, Eleanor H; Jupiter, Stacy D; Albert, Simon (Springer Science and Business Media LLC, 2025-05-17)
      Nearshore reefs, at the interface of land-sea interactions, provide essential ecosystem services, but are susceptible to multiple global and local stressors. These stressors can detrimentally impact coral growth and the continuity of the reef framework. Here, we analyse coral growth records (1998 – 2016) of massive <jats:italic>Porites</jats:italic> spp. colonies from nearshore reefs in Fiji. Our aim is to assess the role of thermal stress and turbidity on coral growth across a range of environments. Our findings reveal a negative linear relationship between linear extension and seawater turbidity across locations (GLM, R<jats:sup>2</jats:sup> = 0.42, <jats:italic>p</jats:italic> &lt; 0.001), indicating that average coral growth is significantly influenced by local environmental conditions. On interannual timescales, all locations experienced a 14% to 30% decrease in linear extension in response to acute thermal stress during the 2013 – 2016 period. This finding highlights the existence of compounding effects between water quality and thermal stress. We suggest that inshore, long-lived massive hard corals in areas of high turbidity are more vulnerable to increasing SSTs due to an already reduced mean growth. Integrated management strategies in these regions that considers managing for multiple, interacting local stressors are warranted to enhance resilience.
    • The northernmost known observation of Myrmecophilus acervorum and the first records of Myrmecophilidae (Orthoptera, Ensifera) from Latvia

      Balodis, Aleksandrs; Starka, Rūta; Telnov, Dmitry (Pensoft, 2025-04-25)
      The first observations of myrmecophilous ant cricket Myrmecophilus acervorum (Panzer, 1799) and the family Myrmecophilidae from Latvia are presented. The observations were made in two locations subject to flooding in springtime. Adult and juvenile female individuals were observed. The discussed records appear to be the northernmost known distribution limit of this species.
    • The evolutionary history and timeline of mites in ancient soils

      Klimov, Pavel B; Kolesnikov, Vasiliy B; Vorontsov, Dmitry D; Ball, Alexander D; Bolton, Samuel J; Mellish, Claire; Edgecombe, GD; Pepato, Almir R; Chetverikov, Philipp E; He, Qixin; et al. (Springer Science and Business Media LLC, 2025-04-19)
      Acariform mites play a crucial role as primary soil decomposers, impacting the carbon cycle. However, the timing of their diversification is uncertain, with estimated dates ranging from the Precambrian (no land plants) to the Carboniferous (diverse terrestrial ecosystems). One factor affecting these time estimates is an uncertain phylogenetic position of the earliest unequivocal fossil mites from the Devonian Rhynie Chert, which have been classified in five modern families and three suborders. Here, we thoroughly examine these specimens, assign them to a single species Protacarus crani (family Protoacaridae, fam. nov., suborder Endeostigmata) and integrate this information into a time-calibrated phylogenetic analysis. Our phylogeny suggests a Cambrian basal divergence of Acariformes (508-486 Ma), coinciding with the land colonization by bryophytes. At this time, the mites' ecological niches were probably diversified beyond the upper soil. Our study provides temporal context, improves the accuracy of fossil dating, and underscores the importance of mites' diverse habitats and their potential roles in soil food webs.
    • Gregarious behaviour in Carboniferous cyclidan crustaceans

      Bicknell, Russell DC; Klompmaker, Adiël A; Edgecombe, GD; McCoy, Victoria E; Young, Andrew; Lauer, Bruce; Lauer, René; Cuomo, Carmela (The Royal Society, 2025-03-19)
      Gregarious behaviours in modern and fossil arthropods are commonly associated with defensive strategies, mass moulting and synchronous reproduction. Such behaviour is scarcely documented in the crustacean fossil record. Identifying clusters in extinct Pancrustacea is, therefore, important for understanding the evolutionary history and origin of crustacean gregariousness. Cyclida, an order of extinct, enigmatic pancrustaceans that have been subject to limited palaeoecological examination, represents an ideal group for testing the presence of gregarious behaviour. Here, we report a cluster of 50 <jats:italic>Schramine montanaensis</jats:italic> individuals from the Serpukhovian-aged Bear Gulch Limestone of Montana, USA, expanding the exceptionally rare record of cyclidan aggregations. The presence of articulated specimens with appendages and possible gill preservation supports the interpretation of carcasses that were preserved during a rapid burial event. We propose that this cluster records either a mass moulting event or clustering for shelter, representing one of the oldest records of crustacean gregariousness. These findings provide important insights into cyclidan life modes and ecological interactions in Carboniferous marine environments.
    • Semi‐quantitative characterisation of mixed pollen samples using MinION sequencing and Reverse Metagenomics (RevMet)

      Peel, Ned; Dicks, Lynn V; Clark, Matthew D; Heavens, Darren; Percival‐Alwyn, Lawrence; Cooper, Chris; Davies, Richard G; Leggett, Richard M; Yu, Douglas W; Freckleton, Robert (Wiley, 2019-07-08)
      The ability to identify and quantify the constituent plant species that make up a mixed‐species sample of pollen has important applications in ecology, conservation, and agriculture. Recently, metabarcoding protocols have been developed for pollen that can identify constituent plant species, but there are strong reasons to doubt that metabarcoding can accurately quantify their relative abundances. A PCR‐free, shotgun metagenomics approach has greater potential for accurately quantifying species relative abundances, but applying metagenomics to eukaryotes is challenging due to low numbers of reference genomes. We have developed a pipeline, RevMet (Reverse Metagenomics) that allows reliable and semi‐quantitative characterization of the species composition of mixed‐species eukaryote samples, such as bee‐collected pollen, without requiring reference genomes. Instead, reference species are represented only by ‘genome skims’: low‐cost, low‐coverage, short‐read sequence datasets. The skims are mapped to individual long reads sequenced from mixed‐species samples using the MinION, a portable nanopore sequencing device, and each long read is uniquely assigned to a plant species. We genome‐skimmed 49 wild UK plant species, validated our pipeline with mock DNA mixtures of known composition, and then applied RevMet to pollen loads collected from wild bees. We demonstrate that RevMet can identify plant species present in mixed‐species samples at proportions of DNA ≥ 1%, with few false positives and false negatives, and reliably differentiate species represented by high versus low amounts of DNA in a sample. RevMet could readily be adapted to generate semi‐quantitative datasets for a wide range of mixed eukaryote samples. Our per‐sample costs were £90 per genome skim and £60 per pollen sample, and new versions of sequencers available now will further reduce these costs.
    • Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

      Martin, Samuel; Heavens, Darren; Lan, Yuxuan; Horsfield, Samuel; Clark, Matthew D; Leggett, Richard M (Springer Science and Business Media LLC, 2022-01-24)
      Adaptive sampling is a method of software-controlled enrichment unique to nanopore sequencing platforms. To test its potential for enrichment of rarer species within metagenomic samples, we create a synthetic mock community and construct sequencing libraries with a range of mean read lengths. Enrichment is up to 13.87-fold for the least abundant species in the longest read length library; factoring in reduced yields from rejecting molecules the calculated efficiency raises this to 4.93-fold. Finally, we introduce a mathematical model of enrichment based on molecule length and relative abundance, whose predictions correlate strongly with mock and complex real-world microbial communities.
    • Publisher Correction: Facilitating high throughput collections-based genomics: a comparison of DNA extraction and library building methods

      Marsh, William A; Hall, Andie; Barnes, I; Price, Ben (Springer Science and Business Media LLC, 2025-03-19)
    • Facilitating high throughput collections-based genomics: a comparison of DNA extraction and library building methods

      Marsh, William A; Hall, Andie; Barnes, I; Price, Ben (Springer Science and Business Media LLC, 2025-02-19)
      While DNA barcoding methods are an increasingly important tool in biological conservation, the resource requirements of constructing reference libraries frequently reduce their efficacy. One efficient way of sourcing taxonomically validated DNA for reference libraries is to use museum collections. However, DNA degradation intrinsic to historical museum specimens can, if not addressed in the wet lab, lead to low quality data generation and severely limit scientific output. Several DNA extraction and library build methods that are designed to work with degraded DNA have been developed, although the ability to implement these methods at scale and at low cost has yet to be formally addressed. Here, the performance of widely used DNA extraction and library build methods are compared using museum specimens. We find that while our selected DNA extraction methods do not significantly differ in DNA yield, the Santa Cruz Reaction (SCR) library build method is not only the most effective at retrieving degraded DNA from museum specimens but also easily implemented at high throughput for low cost. Results highlight the importance of lab protocol on data yield. An optimised “sample to sequencing” high-throughput protocol which incorporates SCR is included to allow for easy uptake by the wider scientific community.
    • A new euarthropod from the Soom Shale (Ordovician) Konservat‐Lagerstätte, South Africa, with exceptional preservation of the connective endoskeleton and myoanatomy

      Gabbott, Sarah E; Edgecombe, GD; Theron, Johannes N; Aldridge, Richard J (Wiley, 2025-03-26)
      A new exceptionally preserved euarthropod, Keurbos susanae gen. et sp. nov. from the Upper Ordovician Soom Shale Konservat‐Lagerstätte of South Africa, is described herein. Two specimens exhibit an unusual preservation style such that the cuticular exoskeleton is preserved in low relief but retains high‐fidelity details, whereas the internal anatomy is preserved in three dimensions and includes myoanatomy and aspects of the connective inter‐ and intrasegmental endoskeleton. The trunk has 46 homonomous segments and tapers towards the posterior. The dorsal surface comprises the posterior margins of tergites that form rounded paratergal folds at their lateral margins. Sternal morphology is seen from an internal view of the fossils and includes axial sternites and associated ovoid plates, both with fringing setae along their posterior margins. Patchy, incomplete preservation of the appendages is consistent with the ‘reversed’ taphonomy of these fossils in which sclerotized elements that project beyond the body margin, such as lamellae with vascular channels and pits, are preserved, whereas those inside the body margins are absent or poorly expressed. Euarthropod characters include an arthrodized tergal and sternal exoskeleton, and a segmental connective endoskeleton. Recent depopulation of the euarthropod stem group has witnessed conspicuously arthrodized fossils formerly placed in the stem group being shifted into the crown, increasing the likelihood that <jats:italic>Keurbos</jats:italic> is likewise a crown‐group euarthropod. Comparison with a phylogenetically disparate suite of similarly homonomous, multisegmented taxa indicates no convincing synapomorphies. The grouping of relevant middle Palaeozoic exemplars as ‘enantiopod’ pancrustaceans could suggest that Keurbos might be allied.
    • The problems of resolving historical specimen data, focusing on a specimen of Myotis austroriparius (Mammalia, Chiroptera, Vespertilionidae) collected by Thomas Drummond

      Jenkins, Paulina; Sealy, Spencer G (Canadian Science Publishing, 2022-03-15)
      The geographical itineraries of Thomas Drummond’s two separate expeditions to Canada (1825–1827) and the United States of America (1831–1835) are used to provide historical context for the specimens collected and their localities. The coordinates for these locations are estimated and their geographical positions mapped. The difficulties of resolving various problems with historical specimens are explored and several examples are provided, including the contentious origin and identification of a southeastern myotis, Myotis austroriparius (Rhoads, 1897) (NHMUK 1837.4.8.127). Information about type specimens is discussed and the geographical position of several type localities of rodents and a mustelid in the Rocky Mountains and a lagomorph in the USA are refined.