• Decomposed liver has a significantly adverse affect on the development rate of the blowfly Calliphora vicina

      Richards, CS; Rowlinson, CC; Cuttiford, Lue; Grimsley, R; Hall, MJR (Springer Science and Business Media LLC, 2012-04-26)
      The development rate of immature Calliphora vicina reared on decomposed liver was significantly slower, by as much as 30 h (55.4 % of total development time) for mid-sized larvae, and 71 h (35.0 %) and 58 h (14.6 %) if using times to the onset of pupariation and eclosion, respectively, than those of immatures that developed on fresh whole pig's liver. Development rates of larvae reared on decomposed liver were also slower than those of larvae reared on minced pig's liver and frozen/thawed pig's liver. These results suggest that any estimate of minimum post-mortem interval may result in an over estimate if the blowflies used were developing on an already decomposed body.
    • Deep-sea anthropogenic macrodebris harbours rich and diverse communities of bacteria and archaea

      Woodall, LC; Jungblut, AD; Hopkins, K; Hall, A; Robinson, LF; Gwinnett, C; Paterson, GLJ (PLOS, 2018-11-28)
      The deep sea is the largest biome on earth, and microbes dominate in biomass and abundance. Anthropogenic litter is now almost ubiquitous in this biome, and its deposition creates new habitats and environments, including for microbial assemblages. With the ever increasing accumulation of this debris, it is timely to identify and describe the bacterial and archaeal communities that are able to form biofilms on macrodebris in the deep sea. Using 16S rRNA gene high throughput sequencing, we show for the first time the composition of bacteria and archaea on macrodebris collected from the deep sea. Our data suggest differences in the microbial assemblage composition across litter of different materials including metal, rubber, glass, fabric and plastic. These results imply that anthropogenic macrodebris provide diverse habitats for bacterial and archaeal biofilms and each may harbour distinct microbial communities.
    • Deep-Sea Debris in the Central and Western Pacific Ocean

      Amon, Diva; Kennedy, BRC; Cantwell, K; Suhre, K; Glickson, D; Shank, TM; Rotjan, RD (Frontiers Media SA, 2020-05-27)
      Marine debris is a growing problem in the world’s deep ocean. The naturally slow biological and chemical processes operating at depth, coupled with the types of materials that are used commercially, suggest that debris is likely to persist in the deep ocean for long periods of time, ranging from hundreds to thousands of years. However, the realized scale of marine debris accumulation in the deep ocean is unknown due to the logistical, technological, and financial constraints related to deep-ocean exploration. Coordinated deep-water exploration from 2015 to 2017 enabled new insights into the status of deep-sea marine debris throughout the central and western Pacific Basin via ROV expeditions conducted onboard NOAA Ship Okeanos Explorer and RV Falkor. These expeditions included sites in United States protected areas and monuments, other Exclusive Economic Zones, international protected areas, and areas beyond national jurisdiction. Metal, glass, plastic, rubber, cloth, fishing gear, and other marine debris were encountered during 17.5% of the 188 dives from 150 to 6,000 m depth. Correlations were observed between deep-sea debris densities and depth, geological features, and distance from human-settled land. The highest densities occurred off American Samoa and the main Hawaiian Islands. Debris, mostly consisting of fishing gear and plastic, were also observed in most of the large-scale marine protected areas, adding to the growing body of evidence that even deep, remote areas of the ocean are not immune from human impacts. Interactions with and impacts on biological communities were noted, though further study is required to understand the full extent of these impacts. We also discuss potential sources and long-term implications of this debris.
    • Deep-Sea Exploration of the US Gulf of Mexico with NOAA Ship Okeanos Explorer

      France, Scott C.; Amon, Diva; Messing, Charles; Skarke, Adam; Wagner, Daniel; White, Michael P.; Kennedy, BRC; Pawlenko, Nick (The Oceanography Society, 2019-03-01)
    • Deep-Sea Mining: Processes and Impacts

      Jones, Daniel; Amon, Diva; Chapman, Abbie (Oxford University Press, 2020-08-27)
      Mining the extensive accumulations of minerals on the seafloor of the deep ocean can provide important resources but also has the potential to lead to widespread environmental impacts. Some of these impacts are unknown but there are expected to be differences between the mining of the three main resource types: polymetallic nodules, seafloor massive sulphides and cobalt-rich crusts. Here we detail the mining processes as well as the expected impacts of mining and discuss their potential effects to deep-ocean ecosystems. We also highlight the missing evidence needed to underpin effective environmental management and regulation of the nascent deep-sea mining industry.
    • Deep-Sea Misconceptions Cause Underestimation of Seabed-Mining Impacts

      Smith, CR; Tunnicliffe, V; Colaço, A; Drazen, JC; Gollner, S; Levin, LA; Mestre, NC; Metaxas, A; Molodtsova, TN; Morato, T; et al. (Elsevier, 2020-07-31)
      Scientific misconceptions are likely leading to miscalculations of the environmental impacts of deepseabed mining. These result from underestimating mining footprints relative to habitats targeted and poor understanding of the sensitivity, biodiversity, and dynamics of deep-sea ecosystems. Addressing these misconceptions and knowledge gaps is needed for effective management of deep-seabed mining.
    • Deepwater Exploration of the Marianas [in special issue: New Frontiers in Ocean Exploration: The E/V Nautilus, NOAA Ship Okeanos Explorer and R/V Falkor Field Season

      Amon, Diva; Fryer, P; Glickson, D; Pomponi, SA; Lobecker, E; Cantwell, K; Elliott, K; Sowers, D (The Oceanography Society, 2017-03-01)
    • Defining principles for mobile apps and platforms development in citizen science

      Sturm, U; Gold, M; Luna, S; Schade, S; Ceccaroni, L; Kyba, CCM; Claramunt, B; Haklay, M; Kasperowski, D; Albert, A; et al. (2018-01-04)
    • Delegating sex: differential gene expression in stolonizing syllids uncovers the hormonal control of reproduction in Annelida

      Alvarez-Campos, P; Kenny, NJ; Verdes, A; Fernandez, RM; Novo, M; Giribet, G; Riesgo, A (Oxford Academic, 2018-12-11)
      Stolonization in syllid annelids is a unique mode of reproduction among animals. During the breeding season, a structure resembling the adult but containing only gametes, called stolon, is formed generally at the posterior end of the animal. When stolons mature, they detach from the adult and gametes are released into the water column. The process is synchronized within each species, and it has been reported to be under environmental and endogenous control, probably via endocrine regulation. To further understand reproduction in syllids and to elucidate the molecular toolkit underlying stolonization, we generated Illumina RNA-seq data from different tissues of reproductive and nonreproductive individuals of Syllis magdalena and characterized gene expression during the stolonization process. Several genes involved in gametogenesis (ovochymase, vitellogenin, testis-specific serine/threonine-kinase), immune response (complement receptor 2), neuronal development (tyrosine-protein kinase Src42A), cell proliferation (alpha-1D adrenergic receptor), and steroid metabolism (hydroxysteroid dehydrogenase 2) were found differentially expressed in the different tissues and conditions analyzed. In addition, our findings suggest that several neurohormones, such as methyl farnesoate, dopamine, and serotonin, might trigger stolon formation, the correct maturation of gametes and the detachment of stolons when gametogenesis ends. The process seems to be under circadian control, as indicated by the expression patterns of r-opsins. Overall, our results shed light into the genes that orchestrate the onset of gamete formation and improve our understanding of how some hormones, previously reported to be involved in reproduction and metamorphosis processes in other invertebrates, seem to also regulate reproduction via stolonization.
    • The ‘Demange drawings’: known and unknown malacological contribu- tions of Victor Demange (1870-1940)

      Breure, ASH; Ablett, J (Cernuelle, 2016-09-01)
      In the Bavay archives a collection of drawings of Vietnamese land and freshwater snails is present, which have never been published. They originate from Victor Demange who had them made by a local raftsman. The drawings are here reproduced and some biographical data on Demange, and his contributions to malacology, are presented.
    • Descriptions of two new Australian genera of Anthicidae (Insecta: Coleoptera)

      Telnov, Dmitry (Baltijas Koleopterologijas Instituts/Baltic Institute of Coleopterology, 2018-12-23)
      Two new Australian Anthicidae genera, Australosteropes gen. nov. (Steropinae) and Sahulanthicus gen. nov. (Anthicinae: Anthicini) are described, diagnosed, and illustrated. Some critical morphological characters of these new groups and the subfamilies to which they belong are discussed. New combinations are made for the following 18 taxa: Australosteropes davidsonae (Armstrong, 1948) comb. nov. (from Macratria Newman, 1838), Sahulanthicus abundans (Lea, 1922) comb. nov., S. apicalis (King, 1869) comb. nov., S. baudinensis (Champion, 1895) comb. nov., S. brevicollis (King, 1869) comb. nov., S. cavifrons (Champion, 1895) comb. nov., S. crassipes (LaFerté-Sénectère, 1849) comb. nov., S. crassus (King, 1869) comb. nov., S. discoideus (Champion, 1895) comb. nov., S. immaculatus (King, 1869) comb. nov., S. inglorius (Lea, 1896) comb. nov., S. laticollis (MacLeay, 1872) comb. nov., S. luridus (King, 1869) comb. nov., S. monostigma (Champion, 1895) comb. nov., S. obliquefasciatus (King, 1869) comb. nov., S. permutatus (Pic, 1897) comb. nov., S. scutellatus (Lea, 1896) comb. nov. (all from Microhoria Chevrolat, 1877), and S. dilatipennis (Pic, 1900) comb. nov. (from Anthicus Paykull, 1798). Lectotype is designated for Sahulanthicus dilatipennis (Pic, 1900).
    • Designation of a new family group name, Tonzidae fam. nov., for the genus Tonza (Lepidoptera, Yponomeutoidea), based on immature stages of Tonza citrorrhoa

      Kobayashi, S; Matsuoka, H; Kimura, M; Sohn, J-C; Yoshiyasu, Y; Lees, David (European Journal of Taxonomy, 2018-06-12)
      The systematic position of Tonza Walker, 1864 is re-evaluated, based on the characteristics of immature stages and DNA barcodes. Larvae and pupae of Tonza citrorrhoa Meyrick, 1905 are described and illustrated for the first time. Larvae of this species form a loose web among the leaves and branches of the host plant, Putranjiva matsumurae Koidz. (Putranjivaceae Endl.). The immature stages of Tonza exhibit four unique apomorphies including: in the larva, the prolegs on A5 and A6 absent, and the seta L2 on the A1–A8 very small; in the pupa, four minute knobs are positioned in the middle portion on abdominal segments V and VI; while its caudal processes possess a W-shaped spine with numerous minute spines. These characteristics clearly distinguish Tonza from other yponomeutoid families and hence, we propose a new family group name, Tonzidae Kobayashi & Sohn fam. nov., for the genus Tonza. Existing DNA barcode data suggest a relationship with Glyphipterigidae Stainton, 1854. The family level status of Tonzidae fam. nov. provides a hypothesis that needs to be tested with larger molecular data.
    • Detection of ascaridoid nematode parasites in the important marine food-fish Conger myriaster (Brevoort) (Anguilliformes: Congridae) from the Zhoushan Fishery, China

      Chen, H-X; Zhang, L-P; Gibson, David I.; Lü, L; Xu, Z; Li, H-T; Ju, H-D; Li, L (Springer Science and Business Media LLC, 2018-05-02)
      Background The whitespotted conger Conger myriaster (Brevoort) (Anguilliformes: Congridae) is an extremely marketable food fish, commonly consumed as sashimi or sushi in some Asian countries (i.e. Japan, Korea and China). Conger myriaster is also suspected as being an extremely important source of human anisakidosis. However, there is currently very little information on the levels of infection with ascaridoid nematode parasites in this economically important marine fish. The aims of the present study are to determine the species composition, prevalence and mean intensity of ascaridoid parasites of C. myriaster caught in the Zhoushan Fishery. Results A total of 1142 third-stage ascaridoid larvae were isolated from 204 C. myriaster. The overall prevalence of infection was 100% (mean intensity 5.6). Nine species of such larvae were accurately identified using integrative taxonomic techniques involving both morphological and genetic data; these included Anisakis pegreffii, A. typica and A. simplex (sensu stricto) × A. pegreffii, Hysterothylacium fabri, H. aduncum, H. sinense, H. amoyense, H. zhoushanense and Raphidascaris lophii. Although high levels of infection and species richness were revealed in C. myriaster, most of the ascaridoid parasites (1135 individuals) were collected from the body cavity and visceral organs of the fish and only seven individuals of A. pegreffii were found in the musculature. Conclusions This study represents the first report C. myriaster from the Zhoushan Fishery being heavily infected with third-stage ascaridoid larvae. Among the ascaridoid larvae parasitic in this fish, an important etiological agent of human anisakidosis, A. pegreffii (L3), represents the predominant species. The genus Hysterothylacium has the highest species richness, with H. fabri (L3) being the most prevalent species. This high level of infection of A. pegreffii (L3) in C. myriaster suggests a high risk of anisakidosis or associated allergies for people consuming raw or poorly cooked fish originating from this marine area. These findings provide important basic information on the occurrence and infection parameters of ascaridoid nematodes in this economically important marine fish. They also have significant implications for the prevention and control of human anisakidosis when conger eels from the Zhoushan Fishery are consumed.
    • Detection of ultrafine plastics ingested by seabirds using tissue digestion.

      Lavers, JL; Stivaktakis, G; Hutton, I; Bond, AL (Elsevier, 2019-04-06)
      Plastic debris is a major global threat to marine ecosystems and species. However, our knowledge of this issue may be incomplete due to a lack of a standardized method for quantifying ingested ultrafine particles (1 μm - 1 mm) in wildlife. This study provides the first quantification of ultrafine plastic in seabirds using chemical and biological digestion treatments to extract plastic items from seabird gizzards. The alkaline agent, potassium hydroxide, outperformed the enzyme corolase, based on cost and efficiency (e.g., digestion time). Ultrafine plastics were observed in 7.0% of Flesh-footed Shearwater (Ardenna carneipes) gizzards collected from Lord Howe Island, Australia and accounted for 3.6% of all plastic items recovered (13 out of 359 items). Existing methods for extracting ingested plastic from seabirds do not account for ultrafine particles, therefore our results indicate current seabird plastic loads, and the associated physical and biological impacts, are underestimated.
    • Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium

      Webster, BL; Rabone, M; Pennance, T; Emery, AM; Allan, F; Gouvras, A; Knopp, S; Garba, A; Hamidou, AA; Mohammed, KA; et al. (2015-12)
    • DeWorm 3: Charting a path towards STH elimination.

      DWorm3 (Natural History Museum, 2020-01-30)
    • Dichotomous keys to the species of Solanum L. (Solanaceae) in continental Africa, Madagascar (incl. the Indian Ocean islands), Macaronesia and the Cape Verde Islands

      Knapp, S; Vorontsova, Maria; Särkinen, T (Pensoft Publishers, 2019-07-19)
      Solanum L. (Solanaceae) is one of the largest genera of angiosperms and presents difficulties in identification due to lack of regional keys to all groups. Here we provide keys to all 135 species of Solanum native and naturalised in Africa (as defined by World Geographical Scheme for Recording Plant Distributions): continental Africa, Madagascar (incl. the Indian Ocean islands of Mauritius, La Réunion, the Comoros and the Seychelles), Macaronesia and the Cape Verde Islands. Some of these have previously been published in the context of monographic works, but here we include all taxa. The paper is designed to be used in conjunction with the web resource Solanaceae Source (www.solanaceaesource.org) and hyperlinks provide access to online descriptions, synonymy and images (where available) of each species. All taxa treated and specimens seen are included in searchable Suppl. material 1, 2.