• Designation of a new family group name, Tonzidae fam. nov., for the genus Tonza (Lepidoptera, Yponomeutoidea), based on immature stages of Tonza citrorrhoa

      Kobayashi, S; Matsuoka, H; Kimura, M; Sohn, J-C; Yoshiyasu, Y; Lees, David (European Journal of Taxonomy, 2018-06-12)
      The systematic position of Tonza Walker, 1864 is re-evaluated, based on the characteristics of immature stages and DNA barcodes. Larvae and pupae of Tonza citrorrhoa Meyrick, 1905 are described and illustrated for the first time. Larvae of this species form a loose web among the leaves and branches of the host plant, Putranjiva matsumurae Koidz. (Putranjivaceae Endl.). The immature stages of Tonza exhibit four unique apomorphies including: in the larva, the prolegs on A5 and A6 absent, and the seta L2 on the A1–A8 very small; in the pupa, four minute knobs are positioned in the middle portion on abdominal segments V and VI; while its caudal processes possess a W-shaped spine with numerous minute spines. These characteristics clearly distinguish Tonza from other yponomeutoid families and hence, we propose a new family group name, Tonzidae Kobayashi & Sohn fam. nov., for the genus Tonza. Existing DNA barcode data suggest a relationship with Glyphipterigidae Stainton, 1854. The family level status of Tonzidae fam. nov. provides a hypothesis that needs to be tested with larger molecular data.
    • Detection of ascaridoid nematode parasites in the important marine food-fish Conger myriaster (Brevoort) (Anguilliformes: Congridae) from the Zhoushan Fishery, China

      Chen, H-X; Zhang, L-P; Gibson, David I.; Lü, L; Xu, Z; Li, H-T; Ju, H-D; Li, L (Springer Science and Business Media LLC, 2018-05-02)
      Background The whitespotted conger Conger myriaster (Brevoort) (Anguilliformes: Congridae) is an extremely marketable food fish, commonly consumed as sashimi or sushi in some Asian countries (i.e. Japan, Korea and China). Conger myriaster is also suspected as being an extremely important source of human anisakidosis. However, there is currently very little information on the levels of infection with ascaridoid nematode parasites in this economically important marine fish. The aims of the present study are to determine the species composition, prevalence and mean intensity of ascaridoid parasites of C. myriaster caught in the Zhoushan Fishery. Results A total of 1142 third-stage ascaridoid larvae were isolated from 204 C. myriaster. The overall prevalence of infection was 100% (mean intensity 5.6). Nine species of such larvae were accurately identified using integrative taxonomic techniques involving both morphological and genetic data; these included Anisakis pegreffii, A. typica and A. simplex (sensu stricto) × A. pegreffii, Hysterothylacium fabri, H. aduncum, H. sinense, H. amoyense, H. zhoushanense and Raphidascaris lophii. Although high levels of infection and species richness were revealed in C. myriaster, most of the ascaridoid parasites (1135 individuals) were collected from the body cavity and visceral organs of the fish and only seven individuals of A. pegreffii were found in the musculature. Conclusions This study represents the first report C. myriaster from the Zhoushan Fishery being heavily infected with third-stage ascaridoid larvae. Among the ascaridoid larvae parasitic in this fish, an important etiological agent of human anisakidosis, A. pegreffii (L3), represents the predominant species. The genus Hysterothylacium has the highest species richness, with H. fabri (L3) being the most prevalent species. This high level of infection of A. pegreffii (L3) in C. myriaster suggests a high risk of anisakidosis or associated allergies for people consuming raw or poorly cooked fish originating from this marine area. These findings provide important basic information on the occurrence and infection parameters of ascaridoid nematodes in this economically important marine fish. They also have significant implications for the prevention and control of human anisakidosis when conger eels from the Zhoushan Fishery are consumed.
    • Detection of ultrafine plastics ingested by seabirds using tissue digestion.

      Lavers, JL; Stivaktakis, G; Hutton, I; Bond, AL (Elsevier, 2019-04-06)
      Plastic debris is a major global threat to marine ecosystems and species. However, our knowledge of this issue may be incomplete due to a lack of a standardized method for quantifying ingested ultrafine particles (1 μm - 1 mm) in wildlife. This study provides the first quantification of ultrafine plastic in seabirds using chemical and biological digestion treatments to extract plastic items from seabird gizzards. The alkaline agent, potassium hydroxide, outperformed the enzyme corolase, based on cost and efficiency (e.g., digestion time). Ultrafine plastics were observed in 7.0% of Flesh-footed Shearwater (Ardenna carneipes) gizzards collected from Lord Howe Island, Australia and accounted for 3.6% of all plastic items recovered (13 out of 359 items). Existing methods for extracting ingested plastic from seabirds do not account for ultrafine particles, therefore our results indicate current seabird plastic loads, and the associated physical and biological impacts, are underestimated.
    • Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium

      Webster, BL; Rabone, M; Pennance, T; Emery, AM; Allan, F; Gouvras, A; Knopp, S; Garba, A; Hamidou, AA; Mohammed, KA; et al. (2015-12)
    • DeWorm 3: Charting a path towards STH elimination.

      DWorm3 (Natural History Museum, 2020-01-30)
    • Dichotomous keys to the species of Solanum L. (Solanaceae) in continental Africa, Madagascar (incl. the Indian Ocean islands), Macaronesia and the Cape Verde Islands

      Knapp, S; Vorontsova, Maria; Särkinen, T (Pensoft Publishers, 2019-07-19)
      Solanum L. (Solanaceae) is one of the largest genera of angiosperms and presents difficulties in identification due to lack of regional keys to all groups. Here we provide keys to all 135 species of Solanum native and naturalised in Africa (as defined by World Geographical Scheme for Recording Plant Distributions): continental Africa, Madagascar (incl. the Indian Ocean islands of Mauritius, La Réunion, the Comoros and the Seychelles), Macaronesia and the Cape Verde Islands. Some of these have previously been published in the context of monographic works, but here we include all taxa. The paper is designed to be used in conjunction with the web resource Solanaceae Source (www.solanaceaesource.org) and hyperlinks provide access to online descriptions, synonymy and images (where available) of each species. All taxa treated and specimens seen are included in searchable Suppl. material 1, 2.
    • Digest: Shape-shifting in Solanaceae flowers: The influence of pollinators*

      Dodsworth, S; Orejuela, A; Peréz-Escobar, O; Särkinen, T; Knapp, S (2018-01-30)
    • Dimensions of biodiversity loss: Spatial mismatch in land-use impacts on species, functional and phylogenetic diversity of European bees

      De Palma, A; Kuhlmann, M; Bugter, R; Ferrier, S; Hoskins, AJ; Potts, SG; Roberts, SPM; Schweiger, O; Purvis, A; Beggs, J (2017-12)
    • Dinosaur diversification rates were not in decline prior to the K-Pg boundary

      Bonsor, Joseph; Barrett, PM; Raven, Tom; Cooper, N (The Royal Society, 2020-11-18)
      Determining the tempo and mode of non-avian dinosaur extinction is one of the most contentious issues in palaeobiology. Extensive disagreements remain over whether their extinction was catastrophic and geologically instantaneous or the culmination of long-term evolutionary trends. These conflicts have arisen due to numerous hierarchical sampling biases in the fossil record and differences in analytical methodology, with some studies identifying long-term declines in dinosaur richness prior to the Cretaceous–Palaeogene (K-Pg) boundary and others proposing continued diversification. Here, we use Bayesian phylogenetic generalized linear mixed models to assess the fit of 12 dinosaur phylogenies to three speciation models (null, slowdown to asymptote, downturn). We do not find strong support for the downturn model in our analyses, which suggests that dinosaur speciation rates were not in terminal decline prior to the K-Pg boundary and that the clade was still capable of generating new taxa. Nevertheless, we advocate caution in interpreting the results of such models, as they may not accurately reflect the complexities of the underlying data. Indeed, current phylogenetic methods may not provide the best test for hypotheses of dinosaur extinction; the collection of more dinosaur occurrence data will be essential to test these ideas further.
    • Discovery of a single male Aedes aegypti (L.) in Merseyside, England

      Harbach, RE; Dallimore, T; Hunter, T; Medlock, JM; Vaux, AGC; Strode, C (2017-12)
    • Discovery of an extensive deep-sea fossil serpulid reef associated with a cold seep, Santa Monica Basin, California

      Georgieva, M; Paull, CK; Little, CTS; McGann, M; Sahy, D; Condon, D; Lundsten, L; Pewsey, J; Caress, DW; Vrijenhoek, RC (Frontiers Media, 2019-03-19)
      Multibeam bathymetric mapping of the Santa Monica Basin in the eastern Pacific has revealed the existence of a number of elevated bathymetric features, or mounds, harboring cold seep communities. During 2013–2014, mounds at 600 m water depth were observed for the first time and sampled by Monterey Bay Aquarium Research Institute’s ROV Doc Ricketts. Active cold seeps were found, but surprisingly one of these mounds was characterized by massive deposits composed of fossil serpulid worm tubes (Annelida: Serpulidae) exhibiting various states of mineralization by authigenic carbonate. No living serpulids with equivalent tube morphologies were found at the site; hence the mound was termed “Fossil Hill.” In the present study, the identity of the fossil serpulids and associated fossil community, the ages of fossils and authigenic carbonates, the formation of the fossil serpulid aggregation, and the geological structure of the mound are explored. Results indicate that the tubes were most likely made by a deep-sea serpulid lineage, with radiocarbon dating suggesting that they have a very recent origin during the Late Pleistocene, specifically to the Last Glacial Maximum 20,000 years ago. Additional U-Th analyses of authigenic carbonates mostly corroborate the radiocarbon dates, and also indicate that seepage was occurring while the tubes were being formed. We also document similar, older deposits along the approximate trajectory of the San Pedro Basin Fault. We suggest that the serpulid tube facies formed in situ, and that the vast aggregation of these tubes at Fossil Hill is likely due to a combination of optimal physical environmental conditions and chemosynthetic production, which may have been particularly intense as a result of sea-level lowstand during the Last Glacial Maximum.
    • Disparities in the analysis of morphological disparity

      Guillerme, T; Cooper, N; Brusatte, SL; Davis, KE; Jackson, AL; Gerber, S; Goswami, A; Healy, K; Hopkins, MJ; Jones, MEH; et al. (The Royal Society, 2020-07-01)
      Analyses of morphological disparity have been used to characterize and investigate the evolution of variation in the anatomy, function and ecology of organisms since the 1980s. While a diversity of methods have been employed, it is unclear whether they provide equivalent insights. Here, we review the most commonly used approaches for characterizing and analysing morphological disparity, all of which have associated limitations that, if ignored, can lead to misinterpretation. We propose best practice guidelines for disparity analyses, while noting that there can be no ‘one-size-fits-all’ approach. The available tools should always be used in the context of a specific biological question that will determine data and method selection at every stage of the analysis.
    • Distinct Genetic Diversity of Oncomelania hupensis, Intermediate Host of Schistosoma japonicum in Mainland China as Revealed by ITS Sequences

      Zhao, QP; Jiang, MS; Littlewood, T; Nie, P (Public Library of Science (PLoS), 2010-03-02)
      Background Oncomelania hupensis is the unique intermediate host of Schistosoma japonicum, which causes schistosomiasis endemic in the Far East, and especially in mainland China. O. hupensis largely determines the parasite's geographical range. How O. hupensis's genetic diversity is distributed geographically in mainland China has never been well examined with DNA sequence data. Methodology/Principal Findings In this study we investigate the genetic variation among O. hupensis from different geographical origins using the combined complete internal transcribed spacer 1 (ITS1) and ITS2 regions of nuclear ribosomal DNA. 165 O. hupensis isolates were obtained in 29 localities from 7 provinces across mainland China: lake/marshland and hill regions in Anhui, Hubei, Hunan, Jiangxi and Jiangsu provinces, located along the middle and lower reaches of Yangtze River, and mountainous regions in Sichuan and Yunnan provinces. Phylogenetic and haplotype network analyses showed distinct genetic diversity and no shared haplotypes between populations from lake/marshland regions of the middle and lower reaches of the Yangtze River and populations from mountainous regions of Sichuan and Yunnan provinces. The genetic distance between these two groups is up to 0.81 based on Fst, and branch time was estimated as 2–6 Ma. As revealed in the phylogenetic tree, snails from Sichuan and Yunnan provinces were also clustered separately. Geographical separation appears to be an important factor accounting for the diversification of the two groups of O. hupensis in mainland China, and probably for the separate clades between snails from Sichuan and Yunnan provinces. In lake/marshland and hill regions along the middle and lower reaches of the Yangtze River, three clades were identified in the phylogenetic tree, but without any obvious clustering of snails from different provinces. Conclusions O. hupensis in mainland China may have considerable genetic diversity, and a more complex population structure than expected. It will be of significant importance to consider the genetic diversity of O. hupensis when assessing co-evolutionary interactions with S. japonicum.
    • Distributional Patterns of Polychaetes Across the West Antarctic Based on DNA Barcoding and Particle Tracking Analyses

      Brasier, MJ; Harle, J; Wiklund, H; Jeffreys, RM; Linse, K; Ruhl, HA; Glover, AG (2017-11-16)
      Recent genetic investigations have uncovered a high proportion of cryptic species within Antarctic polychaetes. It is likely that these evolved in isolation during periods of glaciation, and it is possible that cryptic populations would have remained geographically restricted from one another occupying different regions of Antarctica. By analysing the distributions of nine morphospecies, (six of which contained potential cryptic species), we find evidence for widespread distributions within the West Antarctic. Around 60% of the cryptic species exhibited sympatric distributions, and at least one cryptic clade was found to be widespread. Additional DNA barcodes from GenBank and morphological records extended the observed range of three species studied here, and indicate potential circum-Antarctic traits. Particle tracking analyses were used to model theoretical dispersal ranges of pelagic larvae. Data from these models suggest that the observed species distributions inferred from genetic similarity could have been established and maintained through the regional oceanographic currents, including the Antarctic Circumpolar Current (ACC) and its coastal counter current. Improved understanding of the distribution of Antarctic fauna is essential for predicting the impacts of environmental change and determining management strategies for the region.
    • Diversity of Anopheles mosquitoes in Binh Phuoc and Dak Nong Provinces of Vietnam and their relation to disease

      Ngo, C; Dubois, G; Sinou, V; Parzy, D; Le, H; Harbach, RE; Manguin, S (2014)